Commuting is going to be painful. Trek, I think you live in Hayward? Is there an AC Transit bus you can take that circumvents the maze? I think most/all the transbay AC Transit buses let you load bikes onto the front rack. I take the Transbay bus to work, and I think it will be ok- it goes via surface streets to Emeryville, then cuts onto the bridge via a bus lane.
www.actransit.org
Glad you're ok, maillotpois! Thank god no one was hurt.