Actually, AT tends to occur in cycling when you toe pedal (see separate thread) and can also be caused when your saddle is too high (causes you to toe pedal -- ahhhh).
If you've got knee and IT band issues, the bike shop shouldn't have put your saddle to high -- this will especially cause the IT band to flare up. I have to question the wisdom of your bike fitter for making a choice like that.
Neither too high or too low is good. Make like Goldilocks, get yourself back to the shop, and ask them to make it just right.



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-- but this was years ago so my memory may have de-traumatized itself somewhat.
