The other thing you might need if you don't already have it is a saddle with a cut-out down the middle. I am not a happy camper without one. I rode many, many miles on my Terry Butterfly saddle, then test-rode a bike with a non-cutout saddle and was in pain within five miles! You might also just need to give it more time. Whenever I start back up cycling after a long layoff, I get soft tissue pain in the areas you describe. It's like it just needs to toughen up. It does, but it can take a few weeks to be completely pain free. Now I'm touch as nails and rarely get any soreness at all, even up to a full century ride. I ride a leather/ti-rail Terry Butterfly on my three road bikes and love it!
Emily in NC
Emily
2011 Jamis Dakar XC "Toto" - Selle Italia Ldy Gel Flow
2007 Trek Pilot 5.0 WSD "Gloria" - Selle Italia Diva Gel Flow
2004 Bike Friday Petite Pocket Crusoe - Selle Italia Diva Gel Flow