I used some cheap shorts when I first started riding, I made sure I found the right saddle to get the most comfort. Then I moved to better chamois shorts. My suggestion, don't do long rides with a new and uncomfortable saddle. I was riding with friends, and "just couldn't change it" and I paid for it for 3 days. When you get the right saddle, you will know. It took me like 3 or 4 before I found the right one. Both of my saddles have cut outs and gels. They are from the same maker but different styles. Make sure your shorts are well fitting, my friend didn't want "tight" shorts and her chamois pad was drooping off of her. I've convinced her to go a size smaller in shorts so the chamois isn't hanging. She doesn't have that bunching feeling anymore. Ill fitting shorts cause problems too.
2008 Trek FX 7.2/Terry Cite X
2009 Jamis Aurora/Brooks B-68
2010 Trek FX 7.6 WSD/stock bontrager