hi attack,
I'm sorry to hear that your wheel was stolen. what we do here (at the UNM campus, reportedly the worst campus for bike thefts, and I have seen quite a few disassembled bikes at the racks just this semester, with the frames only, one seriously only was the frame and dérailleur left, quite sad but I digress) is if you have the quick release wheels, take the front off, and align it with the back and put a U-Lock through the frame, back and front wheel.
having a separate set of commuting wheels is an EXCELLENT idea, that way you don't have to worry about them at the racks, and if they get stolen it wont hurt as bad to replace them. there are also locking skewers, so that you need tools to get the wheels off, but if you get a flat on the road, it would be problematic, but still an option.
oh and also, if your seat post has quick releases, take the seat/post with you, or you can stick the U lock through your seat rails as well.
as for wheels, i haven't yet built one, but this is reportedly the bible of wheel books:
http://www.amazon.com/Bicycle-Wheel-.../dp/0960723668
ironically, my boss knew the author, and said it is an excellent book.
keep an eye on sales and used LBS goods, and that will help make it easier.
if you are interested, i have a pair of ALX wheels that i have just retired, i wouldn't suggest putting any hard mileage on them (i have to say that i rebuilt the rear hub twice), i maybe put 6000 on them, but I'd be willing to sell the set for cheap. they are shimano compatible. commuter wheels? send me a pm. oh and i have an old 12-25 cassette 9 speed if you need one too, again, i'll sell it for cheap.
best of luck!!



Reply With Quote