Just a thought - you might have someone different at your LBS do the fit this time. Or even look into investing in a professional fit. If you don't have any pain running - then I'm guessing it's something about either the bike Or the pedals. A professional fitter would probably be worth the expense in the end.
Ladies: any suggestions on where KSH could find a professional fitter?
Life should NOT be a journey to the grave with the intention of arriving safely in an attractive and well preserved body, but rather to skid in sideways, champagne in one hand, strawberries in the other, body thoroughly used up, totally worn out and screaming: "Yeah Baby! What a Ride!"