Routeslip.com seems to be working much better these days, though my home laptop still likes it better than my work laptop. I was able to map a 102 mile route the other day so it's happier about long routes. I just saved the route every 20 miles as I went. It's also best to keep to a minimum the dots along your route. Each click adds data that makes the file larger, but you need some to make the route line up with the winding roads.
One cool thing is to turn on the hybrid link so you can combine the map with the satellite photos. I know we all played with the Frappr map but to see it with your route is pretty cool. You can see the ridges and valleys.
One thing though is that it seems to over estimate the total climbing. I had a very short ride that came out high but I finally put it to the test this last weekend with a longer route. Routeslip said 4,134 ft for the route below but my Polar said 3,395. Pretty significant variance. It seems from what others have said that Polar is pretty accurate.
http://www.routeslip.com/map.php?map=3249
Anyway, just thought I'd share. The map above is for a 54 mile loop east of the Napa Valley. The development you can see is the Napa Valley and you can see the redwoods at the tops of the ridges we climb. The lake off to the east is Lake Berryessa and the road on it's west side is the Knoxville Grade, portions of which are on the Knoxville Double.