I road with my big black boot - just used platform pedals. My podiatrist saw me cruising down and street and gave me some crap.
You should get your flexibility back without issues. I wasn't able to fit my shoes right away but eventually I was back to normal. The cool thing was not having the pain in my foot that I had had for years.
Be patient. Ask if you can ride on the trainer with platforms.



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Did you do one foot and then the other? 
