There are a ton of issues here. First I have to say +1 to everything in Knottedyet's post.

Originally Posted by
Onix
1. Feet: I have seen a podiatrist. They diagnosed me with nerve neuromas in the ball of my feet. And, gave me shots in my feet to try to calm them. This has worked about 80%. (thank goodness!) Feet are largely addressed. Occasionally though, I get numbness/pain in the ball of my feet (like I used to when I was walking) when I am peddling. Despite the fact that I really try to focus on not only the pedal push down, but the stroke up/having heel down---this continues to be a problem sometimes
Are you using orthotics when you ride? Chances are you need them if you have these types of foot issues. You may not need a custom orthotic but Specialized makes and orthotic with a forefoot wedge and a metatarsal button that might work.
2. As for perfectly aligned pedals/cleats...do you have any advice on this? I use light action speed plays. (My first, and only cleats/clip pedals). They are free floating. However, sometimes I wish the position could move further back on my foot (they're as far back as they go)...but...I'm not really sure where they are supposed to be. It seems to all be guess work? Any positions you have found particularly helpful for knee pain?
I know that a lot of people out there swear by speedplays but I have to say that in your case they are probably contributing to your problem. If not your knee pain then they can make your foot pain worse. I often recommend a Look or Time style pedal to people with forefoot neuroma/pain and yes, you want the cleats positioned farther back on the shoe. Ideally the knuckle that joins your baby toe to your foot should be in line with your pedal axle when you are clipped in.
4. My PT has never seen me on a bike. How did you guys find PTs that know a lot about cycling? I have been fit on my bike. So, presumably, the seat height is good. The fitter also noticed that I rolled my knee out a bit with my stroke, which I have been trying to correct. He also noticed that I rock my hips a lot when I ride, despite having the right saddle height. Go figure.
You may be able to find a PT that does bike fitting. I do and so does Knott. But we're in the PNW... I have no idea where you are. I would ask around at PT clinics for a PT that does fitting, ask at the bike shops and any local teams you might know of.
8. Things I'm doing with my PT: muscle strengthening exercises for the muscles above the knee/inside the knee. Apparently, these are not muscles you develop with cycling. (And, since I haven't been able to walk more than about 15 minutes without intense pain, and I definitely can't run anymore---I was way lopsided. So, lots of half-leg lifts, balance exercises, stability exercises, etc. I can be more detailed about these muscle exercises if desired.
This all sounds pretty good except the bit about not working your muscle on the inside of the knee while riding. If you are riding well (good pedal stroke and painfree) it's actually a very good exercise to develop this muscle. If your pedaling is compromised by form issues, muscle imbalances or pain then it's not so good, but it's not bad either.
I always recommend a lot of hip stretches, foam roller work and stability exercises for the core and hips with these problems. You might want to ask your PT about these things if they are not already being addressed.
Hope that helps.
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