Stretch, stretch, stretch... power yoga great for runners.
Also sounds like you have a shoe problem. I have super high arches. After going through a mutitude of running shoes I finally settled into Adidas. Great arch support and, depending on your footfall, they have a shoe for all of us. I use the cushioned line, as I don't pronate or supinate, plus I'm a mid/toe striker.
Go to a good runners store and take test drives in a few different kinds.
Lastly, don't over train. It'll take a while for your body to get used to an impact sport. Run/jog every other day... rest or do none impact on the off days.
Find a runners club in your area so you'll have a group to run with when the long run days get LONG.



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Also, don't run on pavement or hard surfaces if you can avoid them, my shins will hurt when I do, I am lucky enough to have greenways with crushed gravel and plenty of parkway trails near me, I do make a point of running on pavement maybe once a week b/c I know my races will be paved but if my legs hurt I get off the pavement in to the grass and alternate, my legs thank me too!
) show wear evenly across the sole of the shoe.