You can adjust the bar position as needed. Very cool! Ride the bike a bit first, and get to know it. Yeah, you might be a bit close right now, but wait until you get the saddle situated before you play with the bars much. (fine tune the saddle first)
Your standover sounds pretty "normal" for a horizontal-ish top tube and touring-ish geometry. I can lift my road bikes about a couple inches before they jam into me. (my mtb-style critter, well, that's another story! We're looking at a whole lotta inches there!)
Edit: And like CA-in-NC, I'm pretty close to my Cross Check! :D

